Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs3748595 chr1:887560 A/C 0.000178 109 0 15.67 14.22 KM Plot
LAML rs3748596 chr1:888639 T/C 0.000158 111 0 15.67 14.22 KM Plot
LAML rs3748597 chr1:888659 C/T 0.000158 111 14.22 15.67 0 KM Plot
LAML rs3751802 chr16:86565882 G/C 2.24E-5 107 14.13 19.33 0.52 KM Plot
LAML rs3756996 chr6:127664258 G/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs376325792 chr14:77884053 TTTTG/T 0.000164 111 13.15 20.27 1.02 KM Plot
LAML rs3763722 chr10:859270 C/T 1.94E-6 111 14.75 16.2 7.13 KM Plot
LAML rs3764067 chr13:24042897 T/C 1.26E-7 110 13.2 21.78 1 KM Plot
LAML rs3764449 chr17:28621103 C/T 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs377046690 chr13:48697163 AATCCTATCCT/AATCCT 0.000156 111 15.2 14.7 0 KM Plot
LAML rs377580314 chr19:33915900 AAACAAAC/A 2.99E-5 110 16.3 10.65 3 KM Plot
LAML rs377614862 chr2:174141002 TCTCCTCTCCCCTTCC/T 7.68E-5 107 17.77 9.12 0 KM Plot
LAML rs3777896 chr6:134300757 A/G 0.000172 109 16.17 10.13 1 KM Plot
LAML rs3786779 chr19:48255284 G/A 3.21E-7 108 5.1 21.87 15.17 KM Plot
LAML rs3789595 chr1:114191647 G/A 0.000118 110 13.1 21.8 5.6 KM Plot